WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045888 Gene Name  21ur-3779
Sequence Name  ? T06A10.11 Organism  Caenorhabditis elegans
Biotype  SO:0001638 Genetic Position  IV :15.4079±
Length (nt)  ? 21
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045888

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T06A10.11 T06A10.11 21   IV: 16884670-16884690
 

Other

0 CDSs

0 RNAi Result

16 Allele

Public Name
gk964078
gk964500
gk962765
gk963590
gk963795
gk962529
gk963948
gk963888
WBVar02122004
WBVar02121895
WBVar02123114
WBVar02124369
WBVar02124128
WBVar02123841
WBVar02123694
WBVar02124222

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00045888 16884670 16884690 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_16884691..16885521   831 IV: 16884691-16885521 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat Shock: 35C 4 hours at L4 larva stage. piRNAs that showed significantly increased expression after L4 larva N2 animals were heat stressed at 35C for 4 hours DESeq2 WBPaper00057154:HeatShock_upregulated_piRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00045888 16884670 16884690 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
21

1 Sequence Ontology Term