WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.5.1 Sequence Name  Y116A8C.5.1
Length (nt)  1933   Chromosome Location  IV: 16924392-16927057
Chromosome . Primary Identifier  IV Chromosome Location . Start  16924392
Chromosome Location . End  16927057 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013786 nep-24 Y116A8C.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.5 Y116A8C.5 1704   IV: 16924392-16924541

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.5.1 16924392 16927057 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon166378   150   IV: 16924392-16924541 Caenorhabditis elegans
Exon166379   130   IV: 16924586-16924715 Caenorhabditis elegans
Exon166380   86   IV: 16924763-16924848 Caenorhabditis elegans
Exon166381   246   IV: 16924893-16925138 Caenorhabditis elegans
Exon166382   285   IV: 16925190-16925474 Caenorhabditis elegans
Exon166383   120   IV: 16925841-16925960 Caenorhabditis elegans
Exon166384   255   IV: 16926004-16926258 Caenorhabditis elegans
Exon166385   163   IV: 16926304-16926466 Caenorhabditis elegans
Exon166386   457   IV: 16926511-16926967 Caenorhabditis elegans
Exon166387   41   IV: 16927017-16927057 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.5.1 16924392 16927057 1

1 Sequence

Length
1933

1 Sequence Ontology Term

Identifier Name Description
transcript