WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.14a.1 Sequence Name  Y116A8C.14a.1
Length (nt)  2586   Chromosome Location  IV: 16965284-16970490
Chromosome . Primary Identifier  IV Chromosome Location . Start  16965284
Chromosome Location . End  16970490 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.14a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004402 rom-3 Y116A8C.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.14a Y116A8C.14a 2586   IV: 16965284-16965454

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.14a.1 16965284 16970490 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon166501   171   IV: 16965284-16965454 Caenorhabditis elegans
Exon166502   260   IV: 16965648-16965907 Caenorhabditis elegans
Exon166504   146   IV: 16965971-16966116 Caenorhabditis elegans
Exon166506   686   IV: 16966341-16967026 Caenorhabditis elegans
Exon166509   618   IV: 16967079-16967696 Caenorhabditis elegans
Exon166510   114   IV: 16967771-16967884 Caenorhabditis elegans
Exon166511   148   IV: 16968013-16968160 Caenorhabditis elegans
Exon166512   74   IV: 16968731-16968804 Caenorhabditis elegans
Exon166513   152   IV: 16968857-16969008 Caenorhabditis elegans
Exon166515   56   IV: 16970114-16970169 Caenorhabditis elegans
Exon166516   72   IV: 16970212-16970283 Caenorhabditis elegans
Exon166517   65   IV: 16970350-16970414 Caenorhabditis elegans
Exon166518   24   IV: 16970467-16970490 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.14a.1 16965284 16970490 -1

1 Sequence

Length
2586

1 Sequence Ontology Term

Identifier Name Description
transcript