WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y116A8C.32a Sequence Name  Y116A8C.32a
Length (nt)  2100   Chromosome Location  IV: 17104545-17104879
Chromosome . Primary Identifier  IV Chromosome Location . Start  17104545
Chromosome Location . End  17104879
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.32a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28108 SFA-1, isoform a 75.2 699 Caenorhabditis elegans
 

Other

18 RNAi

WormBase ID
WBRNAi00009288
WBRNAi00055449
WBRNAi00075322
WBRNAi00083605
WBRNAi00083710
WBRNAi00080035
WBRNAi00083799
WBRNAi00071500
WBRNAi00075323
WBRNAi00026596
WBRNAi00078087
WBRNAi00111876
WBRNAi00108657
WBRNAi00108582
WBRNAi00080123
WBRNAi00083544
WBRNAi00111052
WBRNAi00111156

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y116A8C.32a 17104545 17104879 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013808 sfa-1 Y116A8C.32 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y116A8C.32a 17104545 17104879 -1
CDS:Y116A8C.32a 17105586 17106073 -1
CDS:Y116A8C.32a 17106972 17107358 -1
CDS:Y116A8C.32a 17107882 17108034 -1
CDS:Y116A8C.32a 17108480 17108552 -1
CDS:Y116A8C.32a 17108784 17108884 -1
CDS:Y116A8C.32a 17109925 17110330 -1
CDS:Y116A8C.32a 17110826 17110982 -1

1 Sequence

Length
2100

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y116A8C.32a.1 Y116A8C.32a.1 2820   IV: 17103825-17110982