WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.34a.1 Sequence Name  Y116A8C.34a.1
Length (nt)  1053   Chromosome Location  IV: 17111081-17116657
Chromosome . Primary Identifier  IV Chromosome Location . Start  17111081
Chromosome Location . End  17116657 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.34a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000889 cyn-13 Y116A8C.34 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.34a Y116A8C.34a 996   IV: 17111138-17111461

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.34a.1 17111081 17116657 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

3 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167011   381   IV: 17111081-17111461 Caenorhabditis elegans
Exon167019   424   IV: 17115626-17116049 Caenorhabditis elegans
Exon167020   248   IV: 17116410-17116657 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.34a.1 17111081 17116657 -1

1 Sequence

Length
1053

1 Sequence Ontology Term

Identifier Name Description
transcript