WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52D10.12.2 Sequence Name  C52D10.12.2
Length (nt)  2743   Chromosome Location  IV: 17197895-17206831
Chromosome . Primary Identifier  IV Chromosome Location . Start  17197895
Chromosome Location . End  17206831 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52D10.12.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016879 cnnm-1 C52D10.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52D10.12 C52D10.12 2436   IV: 17198193-17198222

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52D10.12.2 17197895 17206831 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167258   328   IV: 17197895-17198222 Caenorhabditis elegans
Exon167263   199   IV: 17198400-17198598 Caenorhabditis elegans
Exon167275   503   IV: 17199632-17200134 Caenorhabditis elegans
Exon167281   132   IV: 17200889-17201020 Caenorhabditis elegans
Exon167284   522   IV: 17201498-17202019 Caenorhabditis elegans
Exon167294   118   IV: 17203001-17203118 Caenorhabditis elegans
Exon167299   392   IV: 17203613-17204004 Caenorhabditis elegans
Exon167304   280   IV: 17204538-17204817 Caenorhabditis elegans
Exon167308   101   IV: 17205493-17205593 Caenorhabditis elegans
Exon167316   163   IV: 17206647-17206809 Caenorhabditis elegans
Exon167318   5   IV: 17206827-17206831 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52D10.12.2 17197895 17206831 -1

1 Sequence

Length
2743

1 Sequence Ontology Term

Identifier Name Description
transcript