WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52D10.12.1 Sequence Name  C52D10.12.1
Length (nt)  2758   Chromosome Location  IV: 17197911-17206845
Chromosome . Primary Identifier  IV Chromosome Location . Start  17197911
Chromosome Location . End  17206845 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52D10.12.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016879 cnnm-1 C52D10.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52D10.12 C52D10.12 2436   IV: 17198193-17198222

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52D10.12.1 17197911 17206845 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167259   312   IV: 17197911-17198222 Caenorhabditis elegans
Exon167262   199   IV: 17198400-17198598 Caenorhabditis elegans
Exon167274   503   IV: 17199632-17200134 Caenorhabditis elegans
Exon167280   132   IV: 17200889-17201020 Caenorhabditis elegans
Exon167283   522   IV: 17201498-17202019 Caenorhabditis elegans
Exon167293   118   IV: 17203001-17203118 Caenorhabditis elegans
Exon167298   392   IV: 17203613-17204004 Caenorhabditis elegans
Exon167303   280   IV: 17204538-17204817 Caenorhabditis elegans
Exon167307   101   IV: 17205493-17205593 Caenorhabditis elegans
Exon167317   199   IV: 17206647-17206845 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52D10.12.1 17197911 17206845 -1

1 Sequence

Length
2758

1 Sequence Ontology Term

Identifier Name Description
transcript