WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F3.5b.1 Sequence Name  T28F3.5b.1
Length (nt)  5160   Chromosome Location  IV: 17294791-17300864
Chromosome . Primary Identifier  IV Chromosome Location . Start  17294791
Chromosome Location . End  17300864 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F3.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012131 T28F3.5 T28F3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F3.5b T28F3.5b 4782   IV: 17294793-17294888

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T28F3.5b.1 17294791 17300864 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167632   98   IV: 17294791-17294888 Caenorhabditis elegans
Exon167634   139   IV: 17294939-17295077 Caenorhabditis elegans
Exon167636   222   IV: 17295128-17295349 Caenorhabditis elegans
Exon167638   287   IV: 17295412-17295698 Caenorhabditis elegans
Exon167640   198   IV: 17295744-17295941 Caenorhabditis elegans
Exon167642   302   IV: 17295990-17296291 Caenorhabditis elegans
Exon167644   316   IV: 17296337-17296652 Caenorhabditis elegans
Exon167646   180   IV: 17296701-17296880 Caenorhabditis elegans
Exon167648   255   IV: 17296931-17297185 Caenorhabditis elegans
Exon167650   98   IV: 17297238-17297335 Caenorhabditis elegans
Exon167652   871   IV: 17297383-17298253 Caenorhabditis elegans
Exon167654   140   IV: 17298298-17298437 Caenorhabditis elegans
Exon167656   355   IV: 17298485-17298839 Caenorhabditis elegans
Exon167658   210   IV: 17298891-17299100 Caenorhabditis elegans
Exon167660   219   IV: 17299146-17299364 Caenorhabditis elegans
Exon167662   262   IV: 17299417-17299678 Caenorhabditis elegans
Exon167664   417   IV: 17299729-17300145 Caenorhabditis elegans
Exon167666   591   IV: 17300274-17300864 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T28F3.5b.1 17294791 17300864 1

1 Sequence

Length
5160

1 Sequence Ontology Term

Identifier Name Description
transcript