WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49C3.13.1 Sequence Name  C49C3.13.1
Length (nt)  1598   Chromosome Location  IV: 17347168-17351076
Chromosome . Primary Identifier  IV Chromosome Location . Start  17347168
Chromosome Location . End  17351076 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49C3.13.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008203 clec-198 C49C3.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49C3.13 C49C3.13 1500   IV: 17347181-17347322

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C49C3.13.1 17347168 17351076 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167905   155   IV: 17347168-17347322 Caenorhabditis elegans
Exon167906   96   IV: 17347972-17348067 Caenorhabditis elegans
Exon167907   62   IV: 17348114-17348175 Caenorhabditis elegans
Exon167908   112   IV: 17348220-17348331 Caenorhabditis elegans
Exon167909   62   IV: 17348382-17348443 Caenorhabditis elegans
Exon167910   223   IV: 17348494-17348716 Caenorhabditis elegans
Exon167911   104   IV: 17348764-17348867 Caenorhabditis elegans
Exon167912   54   IV: 17349032-17349085 Caenorhabditis elegans
Exon167913   42   IV: 17349134-17349175 Caenorhabditis elegans
Exon167914   33   IV: 17349464-17349496 Caenorhabditis elegans
Exon167915   42   IV: 17349832-17349873 Caenorhabditis elegans
Exon167916   54   IV: 17349929-17349982 Caenorhabditis elegans
Exon167917   126   IV: 17350347-17350472 Caenorhabditis elegans
Exon167918   106   IV: 17350527-17350632 Caenorhabditis elegans
Exon167919   131   IV: 17350688-17350818 Caenorhabditis elegans
Exon167920   196   IV: 17350881-17351076 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C49C3.13.1 17347168 17351076 1

1 Sequence

Length
1598

1 Sequence Ontology Term

Identifier Name Description
transcript