WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005677 Gene Name  sru-14
Sequence Name  ? T02D1.2 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 and ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  IV :16.6723 ±0.036798 Length (nt)  ? 1360
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005677

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

62 Allele

Public Name
gk964078
gk964500
gk962765
gk963590
gk963948
gk963888
WBVar01970342
WBVar01970341
gk962795
WBVar02124494
WBVar02123843
WBVar02122010
WBVar02123120
WBVar02123268
WBVar00200383
WBVar02123269
gk641036
gk592223
gk223301
gk223302
gk223299
gk223300
WBVar00579278
gk753165
gk882018
gk806601
gk699492
WBVar01673080
WBVar01673079
WBVar01673082

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005677 17393974 17395333 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_17395334..17396209   876 IV: 17395334-17396209 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005677 17393974 17395333 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1360

1 Sequence Ontology Term