WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02D1.5.1 Sequence Name  T02D1.5.1
Length (nt)  2334   Chromosome Location  IV: 17402455-17405630
Chromosome . Primary Identifier  IV Chromosome Location . Start  17402455
Chromosome Location . End  17405630 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02D1.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004061 pmp-4 T02D1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02D1.5 T02D1.5 2205   IV: 17402577-17402808

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T02D1.5.1 17402455 17405630 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168420   354   IV: 17402455-17402808 Caenorhabditis elegans
Exon168421   126   IV: 17402918-17403043 Caenorhabditis elegans
Exon168422   282   IV: 17403148-17403429 Caenorhabditis elegans
Exon168423   95   IV: 17403476-17403570 Caenorhabditis elegans
Exon168424   98   IV: 17403617-17403714 Caenorhabditis elegans
Exon168425   279   IV: 17403768-17404046 Caenorhabditis elegans
Exon168426   181   IV: 17404093-17404273 Caenorhabditis elegans
Exon168427   229   IV: 17404320-17404548 Caenorhabditis elegans
Exon168428   149   IV: 17404596-17404744 Caenorhabditis elegans
Exon168429   153   IV: 17404799-17404951 Caenorhabditis elegans
Exon168430   92   IV: 17405188-17405279 Caenorhabditis elegans
Exon168431   296   IV: 17405335-17405630 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T02D1.5.1 17402455 17405630 -1

1 Sequence

Length
2334

1 Sequence Ontology Term

Identifier Name Description
transcript