WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:4R79.2a.1 Sequence Name  4R79.2a.1
Length (nt)  1286   Chromosome Location  IV: 17480298-17483330
Chromosome . Primary Identifier  IV Chromosome Location . Start  17480298
Chromosome Location . End  17483330 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
4R79.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007067 rabr-2 4R79.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:4R79.2a 4R79.2a 1188   IV: 17480396-17480489

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:4R79.2a.1 17480298 17483330 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168632   192   IV: 17480298-17480489 Caenorhabditis elegans
Exon168634   77   IV: 17480533-17480609 Caenorhabditis elegans
Exon168636   226   IV: 17481162-17481387 Caenorhabditis elegans
Exon168638   129   IV: 17481463-17481591 Caenorhabditis elegans
Exon168640   273   IV: 17481637-17481909 Caenorhabditis elegans
Exon168642   116   IV: 17481964-17482079 Caenorhabditis elegans
Exon168646   53   IV: 17482309-17482361 Caenorhabditis elegans
Exon168647   109   IV: 17482409-17482517 Caenorhabditis elegans
Exon168648   54   IV: 17482934-17482987 Caenorhabditis elegans
Exon168649   57   IV: 17483274-17483330 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:4R79.2a.1 17480298 17483330 -1

1 Sequence

Length
1286

1 Sequence Ontology Term

Identifier Name Description
transcript