WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014471 Gene Name  MTCE.32
Sequence Name  ? MTCE.32 Organism  Caenorhabditis elegans
Automated Description  Enriched in anchor cell based on RNA-seq studies. Is affected by daf-2 based on microarray studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 54
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014471

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:MTCE.32 MTCE.32 54   MtDNA: 10348-10401
 

Other

0 CDSs

0 RNAi Result

0 Allele

1 Chromosome

WormBase ID Organism Length (nt)
MtDNA Caenorhabditis elegans 13794  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014471 10348 10401 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrMtDNA_10402..10402   1 MtDNA: 10402-10402 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed significantly increased expression in N2 day 7 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day7_vs_Day1_upregulated_Illumina
  Transcripts that showed significantly increased expression in N2 day 10 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. DESeq fold change > 2, FDR < 0.05. WBPaper00067499:Day10_vs_Day1_upregulated_Illumina
  Transcripts enriched in invading anchor cells comparing to in whole animal. DESeq2v.1.30.1. fold change >= 2, FDR < 0.05 WBPaper00065258:anchor-cell_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014471 10348 10401 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
54

1 Sequence Ontology Term