WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4q.1 Sequence Name  B0348.4q.1
Length (nt)  4874   Chromosome Location  V: 20819-43680
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43680 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4q.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4q B0348.4q 4176   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4q.1 20819 43680 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168737   272   V: 20819-21090 Caenorhabditis elegans
Exon168776   362   V: 22495-22856 Caenorhabditis elegans
Exon168801   136   V: 23159-23294 Caenorhabditis elegans
Exon168839   104   V: 23793-23896 Caenorhabditis elegans
Exon168864   472   V: 24788-25259 Caenorhabditis elegans
Exon168889   165   V: 25965-26129 Caenorhabditis elegans
Exon168914   187   V: 26194-26380 Caenorhabditis elegans
Exon168930   318   V: 28382-28699 Caenorhabditis elegans
Exon168942   180   V: 29336-29515 Caenorhabditis elegans
Exon168963   98   V: 30200-30297 Caenorhabditis elegans
Exon169001   142   V: 35015-35156 Caenorhabditis elegans
Exon169025   738   V: 36118-36855 Caenorhabditis elegans
Exon169049   296   V: 36918-37213 Caenorhabditis elegans
Exon169073   132   V: 38138-38269 Caenorhabditis elegans
Exon169110   270   V: 40454-40723 Caenorhabditis elegans
Exon169134   116   V: 41729-41844 Caenorhabditis elegans
Exon169158   127   V: 42040-42166 Caenorhabditis elegans
Exon169182   104   V: 42214-42317 Caenorhabditis elegans
Exon169200   655   V: 43026-43680 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4q.1 20819 43680 1

1 Sequence

Length
4874

1 Sequence Ontology Term

Identifier Name Description
transcript