WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4m.1 Sequence Name  B0348.4m.1
Length (nt)  4471   Chromosome Location  V: 20819-43691
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43691 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4m B0348.4m 3762   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4m.1 20819 43691 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168740   272   V: 20819-21090 Caenorhabditis elegans
Exon168772   362   V: 22495-22856 Caenorhabditis elegans
Exon168797   136   V: 23159-23294 Caenorhabditis elegans
Exon168822   84   V: 23562-23645 Caenorhabditis elegans
Exon168835   104   V: 23793-23896 Caenorhabditis elegans
Exon168860   472   V: 24788-25259 Caenorhabditis elegans
Exon168885   165   V: 25965-26129 Caenorhabditis elegans
Exon168910   187   V: 26194-26380 Caenorhabditis elegans
Exon168959   98   V: 30200-30297 Caenorhabditis elegans
Exon168997   142   V: 35015-35156 Caenorhabditis elegans
Exon169021   738   V: 36118-36855 Caenorhabditis elegans
Exon169045   296   V: 36918-37213 Caenorhabditis elegans
Exon169069   132   V: 38138-38269 Caenorhabditis elegans
Exon169106   270   V: 40454-40723 Caenorhabditis elegans
Exon169130   116   V: 41729-41844 Caenorhabditis elegans
Exon169154   127   V: 42040-42166 Caenorhabditis elegans
Exon169178   104   V: 42214-42317 Caenorhabditis elegans
Exon169206   666   V: 43026-43691 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4m.1 20819 43691 1

1 Sequence

Length
4471

1 Sequence Ontology Term

Identifier Name Description
transcript