WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4i.1 Sequence Name  B0348.4i.1
Length (nt)  4655   Chromosome Location  V: 20819-43695
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43695 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4i B0348.4i 3942   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4i.1 20819 43695 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168741   272   V: 20819-21090 Caenorhabditis elegans
Exon168768   362   V: 22495-22856 Caenorhabditis elegans
Exon168793   136   V: 23159-23294 Caenorhabditis elegans
Exon168818   84   V: 23562-23645 Caenorhabditis elegans
Exon168831   104   V: 23793-23896 Caenorhabditis elegans
Exon168856   472   V: 24788-25259 Caenorhabditis elegans
Exon168881   165   V: 25965-26129 Caenorhabditis elegans
Exon168906   187   V: 26194-26380 Caenorhabditis elegans
Exon168938   180   V: 29336-29515 Caenorhabditis elegans
Exon168955   98   V: 30200-30297 Caenorhabditis elegans
Exon168993   142   V: 35015-35156 Caenorhabditis elegans
Exon169017   738   V: 36118-36855 Caenorhabditis elegans
Exon169041   296   V: 36918-37213 Caenorhabditis elegans
Exon169065   132   V: 38138-38269 Caenorhabditis elegans
Exon169102   270   V: 40454-40723 Caenorhabditis elegans
Exon169126   116   V: 41729-41844 Caenorhabditis elegans
Exon169150   127   V: 42040-42166 Caenorhabditis elegans
Exon169174   104   V: 42214-42317 Caenorhabditis elegans
Exon169208   670   V: 43026-43695 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4i.1 20819 43695 1

1 Sequence

Length
4655

1 Sequence Ontology Term

Identifier Name Description
transcript