WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4k.1 Sequence Name  B0348.4k.1
Length (nt)  4717   Chromosome Location  V: 20821-43696
Chromosome . Primary Identifier  V Chromosome Location . Start  20821
Chromosome Location . End  43696 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4k B0348.4k 4005   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4k.1 20821 43696 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168743   270   V: 20821-21090 Caenorhabditis elegans
Exon168770   362   V: 22495-22856 Caenorhabditis elegans
Exon168795   136   V: 23159-23294 Caenorhabditis elegans
Exon168820   84   V: 23562-23645 Caenorhabditis elegans
Exon168833   104   V: 23793-23896 Caenorhabditis elegans
Exon168858   472   V: 24788-25259 Caenorhabditis elegans
Exon168883   165   V: 25965-26129 Caenorhabditis elegans
Exon168908   187   V: 26194-26380 Caenorhabditis elegans
Exon168957   98   V: 30200-30297 Caenorhabditis elegans
Exon168978   243   V: 31340-31582 Caenorhabditis elegans
Exon168995   142   V: 35015-35156 Caenorhabditis elegans
Exon169019   738   V: 36118-36855 Caenorhabditis elegans
Exon169043   296   V: 36918-37213 Caenorhabditis elegans
Exon169067   132   V: 38138-38269 Caenorhabditis elegans
Exon169104   270   V: 40454-40723 Caenorhabditis elegans
Exon169128   116   V: 41729-41844 Caenorhabditis elegans
Exon169152   127   V: 42040-42166 Caenorhabditis elegans
Exon169176   104   V: 42214-42317 Caenorhabditis elegans
Exon169211   671   V: 43026-43696 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4k.1 20821 43696 1

1 Sequence

Length
4717

1 Sequence Ontology Term

Identifier Name Description
transcript