WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4o.1 Sequence Name  B0348.4o.1
Length (nt)  5122   Chromosome Location  V: 20823-43689
Chromosome . Primary Identifier  V Chromosome Location . Start  20823
Chromosome Location . End  43689 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4o.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4o B0348.4o 4419   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4o.1 20823 43689 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168744   268   V: 20823-21090 Caenorhabditis elegans
Exon168774   362   V: 22495-22856 Caenorhabditis elegans
Exon168799   136   V: 23159-23294 Caenorhabditis elegans
Exon168837   104   V: 23793-23896 Caenorhabditis elegans
Exon168862   472   V: 24788-25259 Caenorhabditis elegans
Exon168887   165   V: 25965-26129 Caenorhabditis elegans
Exon168912   187   V: 26194-26380 Caenorhabditis elegans
Exon168928   318   V: 28382-28699 Caenorhabditis elegans
Exon168940   180   V: 29336-29515 Caenorhabditis elegans
Exon168961   98   V: 30200-30297 Caenorhabditis elegans
Exon168980   243   V: 31340-31582 Caenorhabditis elegans
Exon168999   142   V: 35015-35156 Caenorhabditis elegans
Exon169023   738   V: 36118-36855 Caenorhabditis elegans
Exon169047   296   V: 36918-37213 Caenorhabditis elegans
Exon169071   132   V: 38138-38269 Caenorhabditis elegans
Exon169108   270   V: 40454-40723 Caenorhabditis elegans
Exon169132   116   V: 41729-41844 Caenorhabditis elegans
Exon169156   127   V: 42040-42166 Caenorhabditis elegans
Exon169180   104   V: 42214-42317 Caenorhabditis elegans
Exon169204   664   V: 43026-43689 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4o.1 20823 43689 1

1 Sequence

Length
5122

1 Sequence Ontology Term

Identifier Name Description
transcript