WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4v.1 Sequence Name  B0348.4v.1
Length (nt)  4541   Chromosome Location  V: 20825-43572
Chromosome . Primary Identifier  V Chromosome Location . Start  20825
Chromosome Location . End  43572 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4v.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4v B0348.4v 3957   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4v.1 20825 43572 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168745   266   V: 20825-21090 Caenorhabditis elegans
Exon168781   362   V: 22495-22856 Caenorhabditis elegans
Exon168806   136   V: 23159-23294 Caenorhabditis elegans
Exon168844   104   V: 23793-23896 Caenorhabditis elegans
Exon168869   472   V: 24788-25259 Caenorhabditis elegans
Exon168894   165   V: 25965-26129 Caenorhabditis elegans
Exon168919   187   V: 26194-26380 Caenorhabditis elegans
Exon168968   98   V: 30200-30297 Caenorhabditis elegans
Exon168983   243   V: 31340-31582 Caenorhabditis elegans
Exon169006   142   V: 35015-35156 Caenorhabditis elegans
Exon169030   738   V: 36118-36855 Caenorhabditis elegans
Exon169054   296   V: 36918-37213 Caenorhabditis elegans
Exon169078   132   V: 38138-38269 Caenorhabditis elegans
Exon169092   36   V: 38991-39026 Caenorhabditis elegans
Exon169115   270   V: 40454-40723 Caenorhabditis elegans
Exon169139   116   V: 41729-41844 Caenorhabditis elegans
Exon169163   127   V: 42040-42166 Caenorhabditis elegans
Exon169187   104   V: 42214-42317 Caenorhabditis elegans
Exon169199   547   V: 43026-43572 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4v.1 20825 43572 1

1 Sequence

Length
4541

1 Sequence Ontology Term

Identifier Name Description
transcript