WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4b.1 Sequence Name  B0348.4b.1
Length (nt)  5005   Chromosome Location  V: 20825-43697
Chromosome . Primary Identifier  V Chromosome Location . Start  20825
Chromosome Location . End  43697 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4b B0348.4b 4296   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4b.1 20825 43697 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168747   266   V: 20825-21090 Caenorhabditis elegans
Exon168761   362   V: 22495-22856 Caenorhabditis elegans
Exon168786   136   V: 23159-23294 Caenorhabditis elegans
Exon168811   84   V: 23562-23645 Caenorhabditis elegans
Exon168824   104   V: 23793-23896 Caenorhabditis elegans
Exon168849   472   V: 24788-25259 Caenorhabditis elegans
Exon168874   165   V: 25965-26129 Caenorhabditis elegans
Exon168899   187   V: 26194-26380 Caenorhabditis elegans
Exon168924   318   V: 28382-28699 Caenorhabditis elegans
Exon168932   180   V: 29336-29515 Caenorhabditis elegans
Exon168948   98   V: 30200-30297 Caenorhabditis elegans
Exon168987   142   V: 35015-35156 Caenorhabditis elegans
Exon169011   738   V: 36118-36855 Caenorhabditis elegans
Exon169035   296   V: 36918-37213 Caenorhabditis elegans
Exon169059   132   V: 38138-38269 Caenorhabditis elegans
Exon169082   36   V: 38991-39026 Caenorhabditis elegans
Exon169096   270   V: 40454-40723 Caenorhabditis elegans
Exon169120   116   V: 41729-41844 Caenorhabditis elegans
Exon169144   127   V: 42040-42166 Caenorhabditis elegans
Exon169168   104   V: 42214-42317 Caenorhabditis elegans
Exon169212   672   V: 43026-43697 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4b.1 20825 43697 1

1 Sequence

Length
5005

1 Sequence Ontology Term

Identifier Name Description
transcript