WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4a.1 Sequence Name  B0348.4a.1
Length (nt)  4973   Chromosome Location  V: 20825-43701
Chromosome . Primary Identifier  V Chromosome Location . Start  20825
Chromosome Location . End  43701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4a B0348.4a 4260   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4a.1 20825 43701 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168748   266   V: 20825-21090 Caenorhabditis elegans
Exon168760   362   V: 22495-22856 Caenorhabditis elegans
Exon168785   136   V: 23159-23294 Caenorhabditis elegans
Exon168810   84   V: 23562-23645 Caenorhabditis elegans
Exon168823   104   V: 23793-23896 Caenorhabditis elegans
Exon168848   472   V: 24788-25259 Caenorhabditis elegans
Exon168873   165   V: 25965-26129 Caenorhabditis elegans
Exon168898   187   V: 26194-26380 Caenorhabditis elegans
Exon168923   318   V: 28382-28699 Caenorhabditis elegans
Exon168931   180   V: 29336-29515 Caenorhabditis elegans
Exon168947   98   V: 30200-30297 Caenorhabditis elegans
Exon168986   142   V: 35015-35156 Caenorhabditis elegans
Exon169010   738   V: 36118-36855 Caenorhabditis elegans
Exon169034   296   V: 36918-37213 Caenorhabditis elegans
Exon169058   132   V: 38138-38269 Caenorhabditis elegans
Exon169095   270   V: 40454-40723 Caenorhabditis elegans
Exon169119   116   V: 41729-41844 Caenorhabditis elegans
Exon169143   127   V: 42040-42166 Caenorhabditis elegans
Exon169167   104   V: 42214-42317 Caenorhabditis elegans
Exon169213   676   V: 43026-43701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4a.1 20825 43701 1

1 Sequence

Length
4973

1 Sequence Ontology Term

Identifier Name Description
transcript