WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4s.1 Sequence Name  B0348.4s.1
Length (nt)  4664   Chromosome Location  V: 20837-43563
Chromosome . Primary Identifier  V Chromosome Location . Start  20837
Chromosome Location . End  43563 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4s.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4s B0348.4s 4101   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4s.1 20837 43563 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168749   254   V: 20837-21090 Caenorhabditis elegans
Exon168778   362   V: 22495-22856 Caenorhabditis elegans
Exon168803   136   V: 23159-23294 Caenorhabditis elegans
Exon168841   104   V: 23793-23896 Caenorhabditis elegans
Exon168866   472   V: 24788-25259 Caenorhabditis elegans
Exon168891   165   V: 25965-26129 Caenorhabditis elegans
Exon168916   187   V: 26194-26380 Caenorhabditis elegans
Exon168944   180   V: 29336-29515 Caenorhabditis elegans
Exon168965   98   V: 30200-30297 Caenorhabditis elegans
Exon168982   243   V: 31340-31582 Caenorhabditis elegans
Exon169003   142   V: 35015-35156 Caenorhabditis elegans
Exon169027   738   V: 36118-36855 Caenorhabditis elegans
Exon169051   296   V: 36918-37213 Caenorhabditis elegans
Exon169075   132   V: 38138-38269 Caenorhabditis elegans
Exon169112   270   V: 40454-40723 Caenorhabditis elegans
Exon169136   116   V: 41729-41844 Caenorhabditis elegans
Exon169160   127   V: 42040-42166 Caenorhabditis elegans
Exon169184   104   V: 42214-42317 Caenorhabditis elegans
Exon169198   538   V: 43026-43563 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4s.1 20837 43563 1

1 Sequence

Length
4664

1 Sequence Ontology Term

Identifier Name Description
transcript