WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4u.1 Sequence Name  B0348.4u.1
Length (nt)  4546   Chromosome Location  V: 20844-43695
Chromosome . Primary Identifier  V Chromosome Location . Start  20844
Chromosome Location . End  43695 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4u.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4u B0348.4u 3858   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4u.1 20844 43695 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168750   247   V: 20844-21090 Caenorhabditis elegans
Exon168780   362   V: 22495-22856 Caenorhabditis elegans
Exon168805   136   V: 23159-23294 Caenorhabditis elegans
Exon168843   104   V: 23793-23896 Caenorhabditis elegans
Exon168868   472   V: 24788-25259 Caenorhabditis elegans
Exon168893   165   V: 25965-26129 Caenorhabditis elegans
Exon168918   187   V: 26194-26380 Caenorhabditis elegans
Exon168946   180   V: 29336-29515 Caenorhabditis elegans
Exon168967   98   V: 30200-30297 Caenorhabditis elegans
Exon169005   142   V: 35015-35156 Caenorhabditis elegans
Exon169029   738   V: 36118-36855 Caenorhabditis elegans
Exon169053   296   V: 36918-37213 Caenorhabditis elegans
Exon169077   132   V: 38138-38269 Caenorhabditis elegans
Exon169114   270   V: 40454-40723 Caenorhabditis elegans
Exon169138   116   V: 41729-41844 Caenorhabditis elegans
Exon169162   127   V: 42040-42166 Caenorhabditis elegans
Exon169186   104   V: 42214-42317 Caenorhabditis elegans
Exon169209   670   V: 43026-43695 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4u.1 20844 43695 1

1 Sequence

Length
4546

1 Sequence Ontology Term

Identifier Name Description
transcript