WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4s.1 Sequence Name  B0348.4s.1
Length (nt)  4664   Chromosome Location  V: 20837-43563
Chromosome . Primary Identifier  V Chromosome Location . Start  20837
Chromosome Location . End  43563 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4s.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4s B0348.4s 4101   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4s.1 20837 43563 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168770   254   V: 20837-21090 Caenorhabditis elegans
Exon168799   362   V: 22495-22856 Caenorhabditis elegans
Exon168824   136   V: 23159-23294 Caenorhabditis elegans
Exon168862   104   V: 23793-23896 Caenorhabditis elegans
Exon168887   472   V: 24788-25259 Caenorhabditis elegans
Exon168912   165   V: 25965-26129 Caenorhabditis elegans
Exon168937   187   V: 26194-26380 Caenorhabditis elegans
Exon168965   180   V: 29336-29515 Caenorhabditis elegans
Exon168986   98   V: 30200-30297 Caenorhabditis elegans
Exon169003   243   V: 31340-31582 Caenorhabditis elegans
Exon169024   142   V: 35015-35156 Caenorhabditis elegans
Exon169048   738   V: 36118-36855 Caenorhabditis elegans
Exon169072   296   V: 36918-37213 Caenorhabditis elegans
Exon169096   132   V: 38138-38269 Caenorhabditis elegans
Exon169133   270   V: 40454-40723 Caenorhabditis elegans
Exon169157   116   V: 41729-41844 Caenorhabditis elegans
Exon169181   127   V: 42040-42166 Caenorhabditis elegans
Exon169205   104   V: 42214-42317 Caenorhabditis elegans
Exon169219   538   V: 43026-43563 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4s.1 20837 43563 1

1 Sequence

Length
4664

1 Sequence Ontology Term

Identifier Name Description
transcript