WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4n.1 Sequence Name  B0348.4n.1
Length (nt)  4590   Chromosome Location  V: 20872-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  20872
Chromosome Location . End  43170 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4n B0348.4n 4455   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4n.1 20872 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168772   219   V: 20872-21090 Caenorhabditis elegans
Exon168794   362   V: 22495-22856 Caenorhabditis elegans
Exon168819   136   V: 23159-23294 Caenorhabditis elegans
Exon168857   104   V: 23793-23896 Caenorhabditis elegans
Exon168882   472   V: 24788-25259 Caenorhabditis elegans
Exon168907   165   V: 25965-26129 Caenorhabditis elegans
Exon168932   187   V: 26194-26380 Caenorhabditis elegans
Exon168948   318   V: 28382-28699 Caenorhabditis elegans
Exon168960   180   V: 29336-29515 Caenorhabditis elegans
Exon168981   98   V: 30200-30297 Caenorhabditis elegans
Exon169000   243   V: 31340-31582 Caenorhabditis elegans
Exon169019   142   V: 35015-35156 Caenorhabditis elegans
Exon169043   738   V: 36118-36855 Caenorhabditis elegans
Exon169067   296   V: 36918-37213 Caenorhabditis elegans
Exon169091   132   V: 38138-38269 Caenorhabditis elegans
Exon169109   36   V: 38991-39026 Caenorhabditis elegans
Exon169128   270   V: 40454-40723 Caenorhabditis elegans
Exon169152   116   V: 41729-41844 Caenorhabditis elegans
Exon169176   127   V: 42040-42166 Caenorhabditis elegans
Exon169200   104   V: 42214-42317 Caenorhabditis elegans
Exon169212   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4n.1 20872 43170 1

1 Sequence

Length
4590

1 Sequence Ontology Term

Identifier Name Description
transcript