WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4h.1 Sequence Name  B0348.4h.1
Length (nt)  4693   Chromosome Location  V: 20818-43696
Chromosome . Primary Identifier  V Chromosome Location . Start  20818
Chromosome Location . End  43696 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4h B0348.4h 3978   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4h.1 20818 43696 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168790   273   V: 20818-21090 Caenorhabditis elegans
Exon168822   362   V: 22495-22856 Caenorhabditis elegans
Exon168847   136   V: 23159-23294 Caenorhabditis elegans
Exon168872   84   V: 23562-23645 Caenorhabditis elegans
Exon168885   104   V: 23793-23896 Caenorhabditis elegans
Exon168910   472   V: 24788-25259 Caenorhabditis elegans
Exon168935   165   V: 25965-26129 Caenorhabditis elegans
Exon168960   187   V: 26194-26380 Caenorhabditis elegans
Exon168992   180   V: 29336-29515 Caenorhabditis elegans
Exon169009   98   V: 30200-30297 Caenorhabditis elegans
Exon169047   142   V: 35015-35156 Caenorhabditis elegans
Exon169071   738   V: 36118-36855 Caenorhabditis elegans
Exon169095   296   V: 36918-37213 Caenorhabditis elegans
Exon169119   132   V: 38138-38269 Caenorhabditis elegans
Exon169140   36   V: 38991-39026 Caenorhabditis elegans
Exon169156   270   V: 40454-40723 Caenorhabditis elegans
Exon169180   116   V: 41729-41844 Caenorhabditis elegans
Exon169204   127   V: 42040-42166 Caenorhabditis elegans
Exon169228   104   V: 42214-42317 Caenorhabditis elegans
Exon169265   671   V: 43026-43696 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4h.1 20818 43696 1

1 Sequence

Length
4693

1 Sequence Ontology Term

Identifier Name Description
transcript