WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4c.1 Sequence Name  B0348.4c.1
Length (nt)  2249   Chromosome Location  V: 20819-30723
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  30723 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4c B0348.4c 1779   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0348.4c.1 20819 30723 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168791   272   V: 20819-21090 Caenorhabditis elegans
Exon168817   362   V: 22495-22856 Caenorhabditis elegans
Exon168842   136   V: 23159-23294 Caenorhabditis elegans
Exon168867   84   V: 23562-23645 Caenorhabditis elegans
Exon168880   104   V: 23793-23896 Caenorhabditis elegans
Exon168905   472   V: 24788-25259 Caenorhabditis elegans
Exon168930   165   V: 25965-26129 Caenorhabditis elegans
Exon168955   187   V: 26194-26380 Caenorhabditis elegans
Exon169004   98   V: 30200-30297 Caenorhabditis elegans
Exon169027   369   V: 30355-30723 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0348.4c.1 20819 30723 1

1 Sequence

Length
2249

1 Sequence Ontology Term

Identifier Name Description
transcript