WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4q.1 Sequence Name  B0348.4q.1
Length (nt)  4874   Chromosome Location  V: 20819-43680
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43680 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4q.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4q B0348.4q 4176   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4q.1 20819 43680 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168792   272   V: 20819-21090 Caenorhabditis elegans
Exon168831   362   V: 22495-22856 Caenorhabditis elegans
Exon168856   136   V: 23159-23294 Caenorhabditis elegans
Exon168894   104   V: 23793-23896 Caenorhabditis elegans
Exon168919   472   V: 24788-25259 Caenorhabditis elegans
Exon168944   165   V: 25965-26129 Caenorhabditis elegans
Exon168969   187   V: 26194-26380 Caenorhabditis elegans
Exon168985   318   V: 28382-28699 Caenorhabditis elegans
Exon168997   180   V: 29336-29515 Caenorhabditis elegans
Exon169018   98   V: 30200-30297 Caenorhabditis elegans
Exon169056   142   V: 35015-35156 Caenorhabditis elegans
Exon169080   738   V: 36118-36855 Caenorhabditis elegans
Exon169104   296   V: 36918-37213 Caenorhabditis elegans
Exon169128   132   V: 38138-38269 Caenorhabditis elegans
Exon169165   270   V: 40454-40723 Caenorhabditis elegans
Exon169189   116   V: 41729-41844 Caenorhabditis elegans
Exon169213   127   V: 42040-42166 Caenorhabditis elegans
Exon169237   104   V: 42214-42317 Caenorhabditis elegans
Exon169255   655   V: 43026-43680 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4q.1 20819 43680 1

1 Sequence

Length
4874

1 Sequence Ontology Term

Identifier Name Description
transcript