WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4l.1 Sequence Name  B0348.4l.1
Length (nt)  4503   Chromosome Location  V: 20819-43687
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43687 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4l B0348.4l 3798   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4l.1 20819 43687 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168793   272   V: 20819-21090 Caenorhabditis elegans
Exon168826   362   V: 22495-22856 Caenorhabditis elegans
Exon168851   136   V: 23159-23294 Caenorhabditis elegans
Exon168876   84   V: 23562-23645 Caenorhabditis elegans
Exon168889   104   V: 23793-23896 Caenorhabditis elegans
Exon168914   472   V: 24788-25259 Caenorhabditis elegans
Exon168939   165   V: 25965-26129 Caenorhabditis elegans
Exon168964   187   V: 26194-26380 Caenorhabditis elegans
Exon169013   98   V: 30200-30297 Caenorhabditis elegans
Exon169051   142   V: 35015-35156 Caenorhabditis elegans
Exon169075   738   V: 36118-36855 Caenorhabditis elegans
Exon169099   296   V: 36918-37213 Caenorhabditis elegans
Exon169123   132   V: 38138-38269 Caenorhabditis elegans
Exon169142   36   V: 38991-39026 Caenorhabditis elegans
Exon169160   270   V: 40454-40723 Caenorhabditis elegans
Exon169184   116   V: 41729-41844 Caenorhabditis elegans
Exon169208   127   V: 42040-42166 Caenorhabditis elegans
Exon169232   104   V: 42214-42317 Caenorhabditis elegans
Exon169258   662   V: 43026-43687 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4l.1 20819 43687 1

1 Sequence

Length
4503

1 Sequence Ontology Term

Identifier Name Description
transcript