WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4j.1 Sequence Name  B0348.4j.1
Length (nt)  4750   Chromosome Location  V: 20819-43691
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43691 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4j B0348.4j 4041   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4j.1 20819 43691 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168794   272   V: 20819-21090 Caenorhabditis elegans
Exon168824   362   V: 22495-22856 Caenorhabditis elegans
Exon168849   136   V: 23159-23294 Caenorhabditis elegans
Exon168874   84   V: 23562-23645 Caenorhabditis elegans
Exon168887   104   V: 23793-23896 Caenorhabditis elegans
Exon168912   472   V: 24788-25259 Caenorhabditis elegans
Exon168937   165   V: 25965-26129 Caenorhabditis elegans
Exon168962   187   V: 26194-26380 Caenorhabditis elegans
Exon169011   98   V: 30200-30297 Caenorhabditis elegans
Exon169032   243   V: 31340-31582 Caenorhabditis elegans
Exon169049   142   V: 35015-35156 Caenorhabditis elegans
Exon169073   738   V: 36118-36855 Caenorhabditis elegans
Exon169097   296   V: 36918-37213 Caenorhabditis elegans
Exon169121   132   V: 38138-38269 Caenorhabditis elegans
Exon169141   36   V: 38991-39026 Caenorhabditis elegans
Exon169158   270   V: 40454-40723 Caenorhabditis elegans
Exon169182   116   V: 41729-41844 Caenorhabditis elegans
Exon169206   127   V: 42040-42166 Caenorhabditis elegans
Exon169230   104   V: 42214-42317 Caenorhabditis elegans
Exon169260   666   V: 43026-43691 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4j.1 20819 43691 1

1 Sequence

Length
4750

1 Sequence Ontology Term

Identifier Name Description
transcript