WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4m.1 Sequence Name  B0348.4m.1
Length (nt)  4471   Chromosome Location  V: 20819-43691
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43691 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4m B0348.4m 3762   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4m.1 20819 43691 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168795   272   V: 20819-21090 Caenorhabditis elegans
Exon168827   362   V: 22495-22856 Caenorhabditis elegans
Exon168852   136   V: 23159-23294 Caenorhabditis elegans
Exon168877   84   V: 23562-23645 Caenorhabditis elegans
Exon168890   104   V: 23793-23896 Caenorhabditis elegans
Exon168915   472   V: 24788-25259 Caenorhabditis elegans
Exon168940   165   V: 25965-26129 Caenorhabditis elegans
Exon168965   187   V: 26194-26380 Caenorhabditis elegans
Exon169014   98   V: 30200-30297 Caenorhabditis elegans
Exon169052   142   V: 35015-35156 Caenorhabditis elegans
Exon169076   738   V: 36118-36855 Caenorhabditis elegans
Exon169100   296   V: 36918-37213 Caenorhabditis elegans
Exon169124   132   V: 38138-38269 Caenorhabditis elegans
Exon169161   270   V: 40454-40723 Caenorhabditis elegans
Exon169185   116   V: 41729-41844 Caenorhabditis elegans
Exon169209   127   V: 42040-42166 Caenorhabditis elegans
Exon169233   104   V: 42214-42317 Caenorhabditis elegans
Exon169261   666   V: 43026-43691 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4m.1 20819 43691 1

1 Sequence

Length
4471

1 Sequence Ontology Term

Identifier Name Description
transcript