WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4g.1 Sequence Name  B0348.4g.1
Length (nt)  4907   Chromosome Location  V: 20819-43704
Chromosome . Primary Identifier  V Chromosome Location . Start  20819
Chromosome Location . End  43704 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4g B0348.4g 4185   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4g.1 20819 43704 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168797   272   V: 20819-21090 Caenorhabditis elegans
Exon168821   362   V: 22495-22856 Caenorhabditis elegans
Exon168846   136   V: 23159-23294 Caenorhabditis elegans
Exon168871   84   V: 23562-23645 Caenorhabditis elegans
Exon168884   104   V: 23793-23896 Caenorhabditis elegans
Exon168909   472   V: 24788-25259 Caenorhabditis elegans
Exon168934   165   V: 25965-26129 Caenorhabditis elegans
Exon168959   187   V: 26194-26380 Caenorhabditis elegans
Exon168991   180   V: 29336-29515 Caenorhabditis elegans
Exon169008   98   V: 30200-30297 Caenorhabditis elegans
Exon169031   243   V: 31340-31582 Caenorhabditis elegans
Exon169046   142   V: 35015-35156 Caenorhabditis elegans
Exon169070   738   V: 36118-36855 Caenorhabditis elegans
Exon169094   296   V: 36918-37213 Caenorhabditis elegans
Exon169118   132   V: 38138-38269 Caenorhabditis elegans
Exon169155   270   V: 40454-40723 Caenorhabditis elegans
Exon169179   116   V: 41729-41844 Caenorhabditis elegans
Exon169203   127   V: 42040-42166 Caenorhabditis elegans
Exon169227   104   V: 42214-42317 Caenorhabditis elegans
Exon169269   679   V: 43026-43704 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4g.1 20819 43704 1

1 Sequence

Length
4907

1 Sequence Ontology Term

Identifier Name Description
transcript