WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4f.1 Sequence Name  B0348.4f.1
Length (nt)  4928   Chromosome Location  V: 20825-43695
Chromosome . Primary Identifier  V Chromosome Location . Start  20825
Chromosome Location . End  43695 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4f B0348.4f 4221   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4f.1 20825 43695 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168801   266   V: 20825-21090 Caenorhabditis elegans
Exon168820   362   V: 22495-22856 Caenorhabditis elegans
Exon168845   136   V: 23159-23294 Caenorhabditis elegans
Exon168870   84   V: 23562-23645 Caenorhabditis elegans
Exon168883   104   V: 23793-23896 Caenorhabditis elegans
Exon168908   472   V: 24788-25259 Caenorhabditis elegans
Exon168933   165   V: 25965-26129 Caenorhabditis elegans
Exon168958   187   V: 26194-26380 Caenorhabditis elegans
Exon168990   180   V: 29336-29515 Caenorhabditis elegans
Exon169007   98   V: 30200-30297 Caenorhabditis elegans
Exon169030   243   V: 31340-31582 Caenorhabditis elegans
Exon169045   142   V: 35015-35156 Caenorhabditis elegans
Exon169069   738   V: 36118-36855 Caenorhabditis elegans
Exon169093   296   V: 36918-37213 Caenorhabditis elegans
Exon169117   132   V: 38138-38269 Caenorhabditis elegans
Exon169139   36   V: 38991-39026 Caenorhabditis elegans
Exon169154   270   V: 40454-40723 Caenorhabditis elegans
Exon169178   116   V: 41729-41844 Caenorhabditis elegans
Exon169202   127   V: 42040-42166 Caenorhabditis elegans
Exon169226   104   V: 42214-42317 Caenorhabditis elegans
Exon169262   670   V: 43026-43695 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4f.1 20825 43695 1

1 Sequence

Length
4928

1 Sequence Ontology Term

Identifier Name Description
transcript