WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4n.1 Sequence Name  B0348.4n.1
Length (nt)  4590   Chromosome Location  V: 20872-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  20872
Chromosome Location . End  43170 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4n B0348.4n 4455   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4n.1 20872 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168806   219   V: 20872-21090 Caenorhabditis elegans
Exon168828   362   V: 22495-22856 Caenorhabditis elegans
Exon168853   136   V: 23159-23294 Caenorhabditis elegans
Exon168891   104   V: 23793-23896 Caenorhabditis elegans
Exon168916   472   V: 24788-25259 Caenorhabditis elegans
Exon168941   165   V: 25965-26129 Caenorhabditis elegans
Exon168966   187   V: 26194-26380 Caenorhabditis elegans
Exon168982   318   V: 28382-28699 Caenorhabditis elegans
Exon168994   180   V: 29336-29515 Caenorhabditis elegans
Exon169015   98   V: 30200-30297 Caenorhabditis elegans
Exon169034   243   V: 31340-31582 Caenorhabditis elegans
Exon169053   142   V: 35015-35156 Caenorhabditis elegans
Exon169077   738   V: 36118-36855 Caenorhabditis elegans
Exon169101   296   V: 36918-37213 Caenorhabditis elegans
Exon169125   132   V: 38138-38269 Caenorhabditis elegans
Exon169143   36   V: 38991-39026 Caenorhabditis elegans
Exon169162   270   V: 40454-40723 Caenorhabditis elegans
Exon169186   116   V: 41729-41844 Caenorhabditis elegans
Exon169210   127   V: 42040-42166 Caenorhabditis elegans
Exon169234   104   V: 42214-42317 Caenorhabditis elegans
Exon169246   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4n.1 20872 43170 1

1 Sequence

Length
4590

1 Sequence Ontology Term

Identifier Name Description
transcript