WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4p.1 Sequence Name  B0348.4p.1
Length (nt)  4212   Chromosome Location  V: 21007-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  21007
Chromosome Location . End  43170 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4p.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4p B0348.4p 4212   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4p.1 21007 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168752   84   V: 21007-21090 Caenorhabditis elegans
Exon168775   362   V: 22495-22856 Caenorhabditis elegans
Exon168800   136   V: 23159-23294 Caenorhabditis elegans
Exon168838   104   V: 23793-23896 Caenorhabditis elegans
Exon168863   472   V: 24788-25259 Caenorhabditis elegans
Exon168888   165   V: 25965-26129 Caenorhabditis elegans
Exon168913   187   V: 26194-26380 Caenorhabditis elegans
Exon168929   318   V: 28382-28699 Caenorhabditis elegans
Exon168941   180   V: 29336-29515 Caenorhabditis elegans
Exon168962   98   V: 30200-30297 Caenorhabditis elegans
Exon169000   142   V: 35015-35156 Caenorhabditis elegans
Exon169024   738   V: 36118-36855 Caenorhabditis elegans
Exon169048   296   V: 36918-37213 Caenorhabditis elegans
Exon169072   132   V: 38138-38269 Caenorhabditis elegans
Exon169089   36   V: 38991-39026 Caenorhabditis elegans
Exon169109   270   V: 40454-40723 Caenorhabditis elegans
Exon169133   116   V: 41729-41844 Caenorhabditis elegans
Exon169157   127   V: 42040-42166 Caenorhabditis elegans
Exon169181   104   V: 42214-42317 Caenorhabditis elegans
Exon169192   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4p.1 21007 43170 1

1 Sequence

Length
4212

1 Sequence Ontology Term

Identifier Name Description
transcript