WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4r.1 Sequence Name  B0348.4r.1
Length (nt)  4137   Chromosome Location  V: 21007-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  21007
Chromosome Location . End  43170 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4r.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4r B0348.4r 4137   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4r.1 21007 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168753   84   V: 21007-21090 Caenorhabditis elegans
Exon168777   362   V: 22495-22856 Caenorhabditis elegans
Exon168802   136   V: 23159-23294 Caenorhabditis elegans
Exon168840   104   V: 23793-23896 Caenorhabditis elegans
Exon168865   472   V: 24788-25259 Caenorhabditis elegans
Exon168890   165   V: 25965-26129 Caenorhabditis elegans
Exon168915   187   V: 26194-26380 Caenorhabditis elegans
Exon168943   180   V: 29336-29515 Caenorhabditis elegans
Exon168964   98   V: 30200-30297 Caenorhabditis elegans
Exon168981   243   V: 31340-31582 Caenorhabditis elegans
Exon169002   142   V: 35015-35156 Caenorhabditis elegans
Exon169026   738   V: 36118-36855 Caenorhabditis elegans
Exon169050   296   V: 36918-37213 Caenorhabditis elegans
Exon169074   132   V: 38138-38269 Caenorhabditis elegans
Exon169090   36   V: 38991-39026 Caenorhabditis elegans
Exon169111   270   V: 40454-40723 Caenorhabditis elegans
Exon169135   116   V: 41729-41844 Caenorhabditis elegans
Exon169159   127   V: 42040-42166 Caenorhabditis elegans
Exon169183   104   V: 42214-42317 Caenorhabditis elegans
Exon169193   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4r.1 21007 43170 1

1 Sequence

Length
4137

1 Sequence Ontology Term

Identifier Name Description
transcript