WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4t.1 Sequence Name  B0348.4t.1
Length (nt)  3894   Chromosome Location  V: 21007-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  21007
Chromosome Location . End  43170 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4t.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4t B0348.4t 3894   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4t.1 21007 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168754   84   V: 21007-21090 Caenorhabditis elegans
Exon168779   362   V: 22495-22856 Caenorhabditis elegans
Exon168804   136   V: 23159-23294 Caenorhabditis elegans
Exon168842   104   V: 23793-23896 Caenorhabditis elegans
Exon168867   472   V: 24788-25259 Caenorhabditis elegans
Exon168892   165   V: 25965-26129 Caenorhabditis elegans
Exon168917   187   V: 26194-26380 Caenorhabditis elegans
Exon168945   180   V: 29336-29515 Caenorhabditis elegans
Exon168966   98   V: 30200-30297 Caenorhabditis elegans
Exon169004   142   V: 35015-35156 Caenorhabditis elegans
Exon169028   738   V: 36118-36855 Caenorhabditis elegans
Exon169052   296   V: 36918-37213 Caenorhabditis elegans
Exon169076   132   V: 38138-38269 Caenorhabditis elegans
Exon169091   36   V: 38991-39026 Caenorhabditis elegans
Exon169113   270   V: 40454-40723 Caenorhabditis elegans
Exon169137   116   V: 41729-41844 Caenorhabditis elegans
Exon169161   127   V: 42040-42166 Caenorhabditis elegans
Exon169185   104   V: 42214-42317 Caenorhabditis elegans
Exon169194   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4t.1 21007 43170 1

1 Sequence

Length
3894

1 Sequence Ontology Term

Identifier Name Description
transcript