WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4x.1 Sequence Name  B0348.4x.1
Length (nt)  3714   Chromosome Location  V: 21007-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  21007
Chromosome Location . End  43170 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4x.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4x B0348.4x 3714   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4x.1 21007 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168756   84   V: 21007-21090 Caenorhabditis elegans
Exon168783   362   V: 22495-22856 Caenorhabditis elegans
Exon168808   136   V: 23159-23294 Caenorhabditis elegans
Exon168846   104   V: 23793-23896 Caenorhabditis elegans
Exon168871   472   V: 24788-25259 Caenorhabditis elegans
Exon168896   165   V: 25965-26129 Caenorhabditis elegans
Exon168921   187   V: 26194-26380 Caenorhabditis elegans
Exon168970   98   V: 30200-30297 Caenorhabditis elegans
Exon169008   142   V: 35015-35156 Caenorhabditis elegans
Exon169032   738   V: 36118-36855 Caenorhabditis elegans
Exon169056   296   V: 36918-37213 Caenorhabditis elegans
Exon169080   132   V: 38138-38269 Caenorhabditis elegans
Exon169093   36   V: 38991-39026 Caenorhabditis elegans
Exon169117   270   V: 40454-40723 Caenorhabditis elegans
Exon169141   116   V: 41729-41844 Caenorhabditis elegans
Exon169165   127   V: 42040-42166 Caenorhabditis elegans
Exon169189   104   V: 42214-42317 Caenorhabditis elegans
Exon169196   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4x.1 21007 43170 1

1 Sequence

Length
3714

1 Sequence Ontology Term

Identifier Name Description
transcript