WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4d.1 Sequence Name  B0348.4d.1
Length (nt)  5056   Chromosome Location  V: 21007-43687
Chromosome . Primary Identifier  V Chromosome Location . Start  21007
Chromosome Location . End  43687 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4d B0348.4d 4539   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4d.1 21007 43687 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168759   84   V: 21007-21090 Caenorhabditis elegans
Exon168763   362   V: 22495-22856 Caenorhabditis elegans
Exon168788   136   V: 23159-23294 Caenorhabditis elegans
Exon168813   84   V: 23562-23645 Caenorhabditis elegans
Exon168826   104   V: 23793-23896 Caenorhabditis elegans
Exon168851   472   V: 24788-25259 Caenorhabditis elegans
Exon168876   165   V: 25965-26129 Caenorhabditis elegans
Exon168901   187   V: 26194-26380 Caenorhabditis elegans
Exon168925   318   V: 28382-28699 Caenorhabditis elegans
Exon168933   180   V: 29336-29515 Caenorhabditis elegans
Exon168950   98   V: 30200-30297 Caenorhabditis elegans
Exon168973   243   V: 31340-31582 Caenorhabditis elegans
Exon168988   142   V: 35015-35156 Caenorhabditis elegans
Exon169012   738   V: 36118-36855 Caenorhabditis elegans
Exon169036   296   V: 36918-37213 Caenorhabditis elegans
Exon169060   132   V: 38138-38269 Caenorhabditis elegans
Exon169083   36   V: 38991-39026 Caenorhabditis elegans
Exon169097   270   V: 40454-40723 Caenorhabditis elegans
Exon169121   116   V: 41729-41844 Caenorhabditis elegans
Exon169145   127   V: 42040-42166 Caenorhabditis elegans
Exon169169   104   V: 42214-42317 Caenorhabditis elegans
Exon169202   662   V: 43026-43687 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4d.1 21007 43687 1

1 Sequence

Length
5056

1 Sequence Ontology Term

Identifier Name Description
transcript