WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y108G3AL.7b.1 Sequence Name  Y108G3AL.7b.1
Length (nt)  5951   Chromosome Location  V: 186167-201297
Chromosome . Primary Identifier  V Chromosome Location . Start  186167
Chromosome Location . End  201297 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y108G3AL.7b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044689 arid-1 Y108G3AL.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y108G3AL.7b Y108G3AL.7b 4947   V: 186305-186307

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y108G3AL.7b.1 186167 201297 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon169447   141   V: 186167-186307 Caenorhabditis elegans
Exon169450   108   V: 186367-186474 Caenorhabditis elegans
Exon169452   160   V: 187259-187418 Caenorhabditis elegans
Exon169456   166   V: 188070-188235 Caenorhabditis elegans
Exon169460   1006   V: 189302-190307 Caenorhabditis elegans
Exon169464   328   V: 191282-191609 Caenorhabditis elegans
Exon169468   1060   V: 192686-193745 Caenorhabditis elegans
Exon169474   848   V: 194545-195392 Caenorhabditis elegans
Exon169480   441   V: 196903-197343 Caenorhabditis elegans
Exon169487   741   V: 198917-199657 Caenorhabditis elegans
Exon169504   952   V: 200346-201297 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y108G3AL.7b.1 186167 201297 1

1 Sequence

Length
5951

1 Sequence Ontology Term

Identifier Name Description
transcript