WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00255729 Gene Name  R11G11.16
Sequence Name  ? R11G11.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by silicon dioxide nanoparticle based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 345
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00255729

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R11G11.16.1 R11G11.16.1 258   V: 524796-525140
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11G11.16 R11G11.16 258   V: 524796-524983

0 RNAi Result

45 Allele

Public Name
gk963591
gk964259
gk963850
gk963027
gk963889
gk962552
gk962551
WBVar02122151
WBVar02124605
gk963767
gk963768
WBVar02123844
WBVar02122634
WBVar02121233
WBVar02120511
WBVar00200851
WBVar02122833
gk953372
WBVar00579563
WBVar02031532
WBVar01773918
WBVar02082637
WBVar02082638
WBVar01519329
WBVar01519328
WBVar01519327
WBVar01519326
WBVar01519325
WBVar01519324
WBVar01519323

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00255729 524796 525140 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_524219..524795   577 V: 524219-524795 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression after exposed to 10ug per ml SiO2 nanoparticles from L1 larva to 1-day post L4 adult hermaphrodite stage. edgeR, fold change > 2 (set by curator), FDR < 0.05. WBPaper00059426:SiO2-nanoparticles_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00255729 524796 525140 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
345

1 Sequence Ontology Term