WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005320 Gene Name  srh-101
Sequence Name  ? F31F4.10 Organism  Caenorhabditis elegans
Automated Description  Enriched in HSNL and PHA based on single-cell RNA-seq studies. Is affected by clk-1; etr-1; and sir-2.1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :-19.969± Length (nt)  ? 1274
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005320

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

107 Allele

Public Name
gk963591
gk963553
gk964259
gk963850
gk963027
gk963889
gk962552
gk962551
WBVar02122151
WBVar02124605
gk963767
gk963768
WBVar02123844
WBVar02124037
WBVar02122634
WBVar01970603
WBVar00201494
WBVar00201496
WBVar00201495
WBVar01908732
WBVar01908731
WBVar01899217
WBVar01899218
WBVar01899213
WBVar01899214
WBVar01774291
WBVar01899215
WBVar01899216
WBVar01774294
WBVar01774295

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005320 660681 661954 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_660311..660680   370 V: 660311-660680 Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_9
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA
  Transcripts enriched in PHA according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:PHA_enriched
  Single-cell RNA-Seq cell group 17_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:17_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005320 660681 661954 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1274

1 Sequence Ontology Term