WormMine: Gene WBGene00268190

• WormBase Gene ID: WBGene00268190
• Gene Name: Y50D4B.10
• Sequence Name: Y50D4B.10
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in PVPL based on single-cell RNA-seq studies. Is affected by pptr-1 and camt-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 947

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00268190

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

42 Allele

• gk963591
• gk963553
• gk964259
• gk963850
• gk963027
• gk963889
• gk962552
• gk962551
• WBVar01970800
• WBVar00202428
• WBVar00202429
• gk947691
• WBVar02122153
• h15625
• WBVar00580761
• WBVar01689569
• WBVar00580762
• WBVar01774566
• gk688596
• WBVar01774565
• gk560705
• gk333875
• gk591780
• gk646795
• gk818774
• gk512792
• gk788038
• gk832990
• gk438461
• WBVar01924554

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00268190
• Start: 1079831
• End: 1080777
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_1079662..1079830
• Length (nt): 169
• Chromosome Location: V: 1079662-1079830
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_downregulated_neural
	Transcripts that showed significantly altered expression at RMG neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.	RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.	WBPaper00061902:camt-1(ok515)_regulated_RMG
	Targets of endo-siRNA that showed significantly increased expression in BFF39[pptr-1(tm3103);Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] comparing to in SX1263[Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] dissected gonad isolated from 1-day old adult hermaphrodites.	DESeq2, fold change > 2, FDR < 0.01	WBPaper00057140:pptr-1(tm3103)_upregulated
	Single-cell RNA-Seq cell group 50_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:50_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00268190
• Start: 1079831
• End: 1080777
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 947

1 Sequence Ontology Term