WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16B3.1b.1 Sequence Name  F16B3.1b.1
Length (nt)  2880   Chromosome Location  V: 1289696-1299208
Chromosome . Primary Identifier  V Chromosome Location . Start  1289696
Chromosome Location . End  1299208 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16B3.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001171 egl-2 F16B3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16B3.1b F16B3.1b 2880   V: 1289696-1289855

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16B3.1b.1 1289696 1299208 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon171897   160   V: 1289696-1289855 Caenorhabditis elegans
Exon171899   338   V: 1290013-1290350 Caenorhabditis elegans
Exon171901   285   V: 1291338-1291622 Caenorhabditis elegans
Exon171903   598   V: 1291666-1292263 Caenorhabditis elegans
Exon171905   175   V: 1292314-1292488 Caenorhabditis elegans
Exon171908   325   V: 1293124-1293448 Caenorhabditis elegans
Exon171910   114   V: 1293495-1293608 Caenorhabditis elegans
Exon171912   124   V: 1293654-1293777 Caenorhabditis elegans
Exon171914   24   V: 1294497-1294520 Caenorhabditis elegans
Exon171916   173   V: 1295244-1295416 Caenorhabditis elegans
Exon171917   125   V: 1297520-1297644 Caenorhabditis elegans
Exon171920   129   V: 1298404-1298532 Caenorhabditis elegans
Exon171922   113   V: 1298578-1298690 Caenorhabditis elegans
Exon171924   118   V: 1298950-1299067 Caenorhabditis elegans
Exon171925   79   V: 1299130-1299208 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16B3.1b.1 1289696 1299208 -1

1 Sequence

Length
2880

1 Sequence Ontology Term

Identifier Name Description
transcript