WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1005.1a.1 Sequence Name  ZK1005.1a.1
Length (nt)  6958   Chromosome Location  V: 1276420-1285700
Chromosome . Primary Identifier  V Chromosome Location . Start  1276420
Chromosome Location . End  1285700 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1005.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004053 tank-1 ZK1005.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1005.1a ZK1005.1a 6831   V: 1276531-1276734

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1005.1a.1 1276420 1285700 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon171930   315   V: 1276420-1276734 Caenorhabditis elegans
Exon171931   645   V: 1276794-1277438 Caenorhabditis elegans
Exon171933   432   V: 1277490-1277921 Caenorhabditis elegans
Exon171935   343   V: 1277971-1278313 Caenorhabditis elegans
Exon171937   245   V: 1278802-1279046 Caenorhabditis elegans
Exon171939   2295   V: 1279093-1281387 Caenorhabditis elegans
Exon171942   114   V: 1281507-1281620 Caenorhabditis elegans
Exon171943   1712   V: 1281698-1283409 Caenorhabditis elegans
Exon171945   199   V: 1283460-1283658 Caenorhabditis elegans
Exon171947   554   V: 1283708-1284261 Caenorhabditis elegans
Exon171949   104   V: 1285597-1285700 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1005.1a.1 1276420 1285700 -1

1 Sequence

Length
6958

1 Sequence Ontology Term

Identifier Name Description
transcript