WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F16B4.11k Sequence Name  F16B4.11k
Length (nt)  753   Chromosome Location  V: 1615763-1616022
Chromosome . Primary Identifier  V Chromosome Location . Start  1615763
Chromosome Location . End  1616022
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16B4.11k

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE50954 NHR-179, isoform k 29.3 250 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00044785
WBRNAi00031027

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F16B4.11k 1615763 1616022 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017512 nhr-179 F16B4.11 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:F16B4.11k 1615763 1616022 -1
CDS:F16B4.11k 1616074 1616189 -1
CDS:F16B4.11k 1616234 1616328 -1
CDS:F16B4.11k 1616395 1616676 -1

1 Sequence

Length
753

1 Sequence Ontology Term

Identifier Name Description
CDS  

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F16B4.11k.1 F16B4.11k.1 1989   V: 1615723-1617970
Transcript:F16B4.11k.5 F16B4.11k.5 1117   V: 1615727-1617724
Transcript:F16B4.11k.4 F16B4.11k.4 1302   V: 1615727-1617962
Transcript:F16B4.11k.2 F16B4.11k.2 2249   V: 1615727-1618860
Transcript:F16B4.11k.3 F16B4.11k.3 1315   V: 1615739-1618007
Transcript:F16B4.11k.6 F16B4.11k.6 1158   V: 1615741-1617723