WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16B4.11k.3 Sequence Name  F16B4.11k.3
Length (nt)  1315   Chromosome Location  V: 1615739-1618007
Chromosome . Primary Identifier  V Chromosome Location . Start  1615739
Chromosome Location . End  1618007 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16B4.11k.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017512 nhr-179 F16B4.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16B4.11k F16B4.11k 753   V: 1615763-1616022

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16B4.11k.3 1615739 1618007 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon172466   284   V: 1615739-1616022 Caenorhabditis elegans
Exon172482   116   V: 1616074-1616189 Caenorhabditis elegans
Exon172498   95   V: 1616234-1616328 Caenorhabditis elegans
Exon172511   359   V: 1616395-1616753 Caenorhabditis elegans
Exon172529   92   V: 1617449-1617540 Caenorhabditis elegans
Exon172544   137   V: 1617586-1617722 Caenorhabditis elegans
Exon172561   232   V: 1617776-1618007 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16B4.11k.3 1615739 1618007 -1

1 Sequence

Length
1315

1 Sequence Ontology Term

Identifier Name Description
transcript