WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y32G9A.6d.1 Sequence Name  Y32G9A.6d.1
Length (nt)  2750   Chromosome Location  V: 1895783-1906791
Chromosome . Primary Identifier  V Chromosome Location . Start  1895783
Chromosome Location . End  1906791 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y32G9A.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021304 nphp-2 Y32G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y32G9A.6d Y32G9A.6d 2505   V: 1895797-1895874

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y32G9A.6d.1 1895783 1906791 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon173140   92   V: 1895783-1895874 Caenorhabditis elegans
Exon173143   131   V: 1896959-1897089 Caenorhabditis elegans
Exon173145   136   V: 1897135-1897270 Caenorhabditis elegans
Exon173147   60   V: 1897317-1897376 Caenorhabditis elegans
Exon173149   726   V: 1898421-1899146 Caenorhabditis elegans
Exon173152   279   V: 1902311-1902589 Caenorhabditis elegans
Exon173156   204   V: 1903043-1903246 Caenorhabditis elegans
Exon173162   192   V: 1903296-1903487 Caenorhabditis elegans
Exon173166   154   V: 1904182-1904335 Caenorhabditis elegans
Exon173178   158   V: 1904382-1904539 Caenorhabditis elegans
Exon173184   115   V: 1905672-1905786 Caenorhabditis elegans
Exon173192   108   V: 1905833-1905940 Caenorhabditis elegans
Exon173200   142   V: 1906338-1906479 Caenorhabditis elegans
Exon173211   253   V: 1906539-1906791 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y32G9A.6d.1 1895783 1906791 1

1 Sequence

Length
2750

1 Sequence Ontology Term

Identifier Name Description
transcript