WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y32G9A.6d.1 Sequence Name  Y32G9A.6d.1
Length (nt)  2750   Chromosome Location  V: 1895783-1906791
Chromosome . Primary Identifier  V Chromosome Location . Start  1895783
Chromosome Location . End  1906791 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y32G9A.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021304 nphp-2 Y32G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y32G9A.6d Y32G9A.6d 2505   V: 1895797-1895874

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y32G9A.6d.1 1895783 1906791 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon173195   92   V: 1895783-1895874 Caenorhabditis elegans
Exon173198   131   V: 1896959-1897089 Caenorhabditis elegans
Exon173200   136   V: 1897135-1897270 Caenorhabditis elegans
Exon173202   60   V: 1897317-1897376 Caenorhabditis elegans
Exon173204   726   V: 1898421-1899146 Caenorhabditis elegans
Exon173207   279   V: 1902311-1902589 Caenorhabditis elegans
Exon173211   204   V: 1903043-1903246 Caenorhabditis elegans
Exon173217   192   V: 1903296-1903487 Caenorhabditis elegans
Exon173221   154   V: 1904182-1904335 Caenorhabditis elegans
Exon173233   158   V: 1904382-1904539 Caenorhabditis elegans
Exon173239   115   V: 1905672-1905786 Caenorhabditis elegans
Exon173247   108   V: 1905833-1905940 Caenorhabditis elegans
Exon173255   142   V: 1906338-1906479 Caenorhabditis elegans
Exon173266   253   V: 1906539-1906791 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y32G9A.6d.1 1895783 1906791 1

1 Sequence

Length
2750

1 Sequence Ontology Term

Identifier Name Description
transcript