WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08B1.1a.1 Sequence Name  T08B1.1a.1
Length (nt)  1993   Chromosome Location  V: 1982613-1987045
Chromosome . Primary Identifier  V Chromosome Location . Start  1982613
Chromosome Location . End  1987045 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08B1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020340 T08B1.1 T08B1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08B1.1a T08B1.1a 1776   V: 1982788-1982944

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08B1.1a.1 1982613 1987045 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon173403   332   V: 1982613-1982944 Caenorhabditis elegans
Exon173406   216   V: 1983073-1983288 Caenorhabditis elegans
Exon173409   328   V: 1983335-1983662 Caenorhabditis elegans
Exon173412   101   V: 1983714-1983814 Caenorhabditis elegans
Exon173415   539   V: 1984304-1984842 Caenorhabditis elegans
Exon173419   102   V: 1985468-1985569 Caenorhabditis elegans
Exon173421   68   V: 1985615-1985682 Caenorhabditis elegans
Exon173423   81   V: 1985729-1985809 Caenorhabditis elegans
Exon173425   149   V: 1986540-1986688 Caenorhabditis elegans
Exon173427   77   V: 1986969-1987045 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08B1.1a.1 1982613 1987045 -1

1 Sequence

Length
1993

1 Sequence Ontology Term

Identifier Name Description
transcript